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DokuFIRE
DokuFIRE is a Flexible Information Retrieval and Extraction system that provides a semantic layer over your document collections.
DokuFIRE allows the user to retrieve a collection of documents from a number of different repositories (Medline, EPO Patents) by simply providing a query of arbitrary complexity. The results of the query are a number of documents in which the semantic types Protein/Gene name, Drug, Disease and Species are detected and annotated, and related information is displayed in the context of the document. The documents are also processed to extract co-occurrences at the sentence level of the findings throughout the complete retrieved corpus. These relations of co-occurrence are represented to the user in the form of a navigation-enabled directed graph.
 
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